Sign up for a free GitHub account to open an issue and contact its maintainers and the community. from /usr/include/libxml2/libxml/tree.h:1307, @steeldriver Thanks - that answers my original question. Why don'y you use the conda package for CRAN's XML (called r-xml)? * checking for gzopen in -lz. CMakeFiles/iio.dir/build.make:302: recipe for target 'CMakeFiles/iio.dir/xml.c.o' failed okay, I missed that I need to have it installed, now it works! How a top-ranked engineering school reimagined CS curriculum (Ep. What positional accuracy (ie, arc seconds) is necessary to view Saturn, Uranus, beyond? Scanning dependencies of target iio [ 42%] Building C object CMakeFiles/iio.dir/xml.c.o Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? While these issues shouldnt impact security, this improves robustness under Refactoring has begun on some buffering and encoding code with the goal of https://nick-black.com/bugzilla/show_bug.cgi?id=543 we had a bug on this uninformative error. I installed R using apt-get. CMakeFiles/iio.dir/build.make:302: recipe for target 'CMakeFiles/iio.dir/xml.c.o' failed English version of Russian proverb "The hedgehogs got pricked, cried, but continued to eat the cactus", How to convert a sequence of integers into a monomial. Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help make[2]: *** [CMakeFiles/iio.dir/xml.c.o] Error 1 [ubuntu] could not be find the libxml2 [ 23%] Building C object CMakeFiles/iio.dir/utilities.c.o -- Configuring done What differentiates living as mere roommates from living in a marriage-like relationship? Ubuntu 14.04 configure: error: "libxml not found". [ 22%] Building C object CMakeFiles/iio.dir/sort.c.o You signed in with another tab or window. checking whether we are cross compiling no I have nearly no idea about cmake, so I probably didn't find out everything, but the file that gets created with the include path seems very wrong: These paths should be /usr/inlucde/libxml2. -- Performing Test HAS_PIPE2 Asking for help, clarification, or responding to other answers. i am totally new about this so sorry if i am asking for such silly thing. The quick solution to the above problem is you need to install libxml2-devel package. checking whether the C compiler works yes Could a subterranean river or aquifer generate enough continuous momentum to power a waterwheel for the purpose of producing electricity? Find centralized, trusted content and collaborate around the technologies you use most. but an incompatible library. You can get all the above info by running: it will tell you the full paths to all the files in that package. I'm trying to figure out what needs to be done to make the configure script happy with libxml2 because libxml-2.0 isn't available. If "Python" Already on GitHub? Internal checking whether gcc accepts -g yes Hi, im getting this on installation, not sure how to resolve, could Checking Irreducibility to a Polynomial with Non-constant Degree over Integer. "No package libxml-2.0 installed" - Linux Mint Forums I run CentOS and have installed the libxml-devel package via yum which is encouraged online. it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able to work out what you need to set and how. How a top-ranked engineering school reimagined CS curriculum (Ep. libxml - pkg-config indicates libxml2 not found - Ask Ubuntu EOF, setenv LIBXML_LIBDIR /home/***/anaconda3/lib/, setenv LIBXML_INCDIR /home/***/anaconda3/include/libxml2/, * installing to library /home/***/anaconda3/lib/R/library Can't find ImageMagick with pkg-config on Ubuntu 16.04. Why typically people don't use biases in attention mechanism? You have to ignore the suggestion from pgModeler documentation. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. @Parfait launched from the shell directly or also from RStudio, same result. While these symbols were never declared in public [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C Warning message: By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, for libxml++2.6 sudo apt-get install libxml++2.6-dev. no checking for xmlParseFile in -lxml. Looking for job perks? It is possible though that large Here are my steps and the results. -- Looking for stdint.h - found I am trying to install the XML package via BiocLite, which I need for various other packages. ^ Have a question about this project? DESeq2 . Making statements based on opinion; back them up with references or personal experience. libffi: Unfortunately, however, this appears not to be the case for libxml2 for some reason. Now this wont work. /usr/include/libxml2/libxml/encoding.h:31:26: fatal error: unicode/ucnv.h: No such file or directory ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. density matrix, Literature about the category of finitary monads. I installed libxml2 with brew and checked a lot of articles, but nothing helped so far. [ 30%] Building C object CMakeFiles/iio.dir/xml.c.o Ask Ubuntu is a question and answer site for Ubuntu users and developers. checking for suffix of executables xml2 installed but not found during compilation. You signed in with another tab or window. How about saving the world? Platform: x86_64-pc-linux-gnu (64-bit) -- Performing Test HAS_O_TMPFILE - Success I've tried to run with & without "/bin" in the PATH and get the same results. [ 15%] Building C object CMakeFiles/iio.dir/context.c.o xml.c always uses /usr/include even though I set my own sysroot path. sequential (one-line) endnotes in plain tex/optex. With over 10 pre-installed distros to choose from, the worry-free installation life is here! Literature about the category of finitary monads. Command line sequence for building libiio: Can the game be left in an invalid state if all state-based actions are replaced? make all, [ 3%] Building C object CMakeFiles/iio.dir/backend.c.o -- Doxygen not found, API documentation won't be generated What is this brick with a round back and a stud on the side used for? How about saving the world? It should be /usr/include/libxml2. is not working in on the command line for Visual Studio Code on OS X/Mac. checking for sed /bin/sed is a Web Designer and content creator. I am also running into the failure when trying to cross-compile libraries. SED_EXTENDED_ARG: -E This time, it was XML. Let me know if you have any further problems. Could you please promote your comment as an answer so I can mark it as such? cmake --sysroot=${PWD}/../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ I had the same error but libxml2-dev was already installed so that didn't help. * It only takes a minute to sign up. /tmp/RtmpY66UhU/downloaded_packages no checking for xmlParseFile in -lxml2. I have tried upgrading to 16.x but the upgrade process fails with errors need to zoom in into that another time. Correct name of the libxml2 configuration file for pkg-config is libxml-2.0.pc, you have already installed it from libxml2-dev package. Updating HTML index of packages in '.Library' Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? If you also run: ./configure --help. I used sudo apt-get install libxml2-dev and it seemed to install ok. Makefile:129: recipe for target 'all' failed What is the Russian word for the color "teal"? how to specify which R lib to use when installing a R package? compilation terminated. linux - No package 'libxml-2.0' found - Stack Overflow Get a virtual cloud desktop with the Linux distro that you want in less than five minutes with Shells! i have noticed that libxml-2.0.pc is exist in other directory i.e. [root@catest php-5.5.7]# yum install libxml2-devel I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. What are the advantages of running a power tool on 240 V vs 120 V? I've updated the README to explicitly mention this dependency. -- Looking for in6addr_any - found By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. long story short: if "/bin" is in your PATH, cmake doesn't work correctly. Thanks! issues see https://gitlab.gnome.org/GNOME/libxml2/-/issues/507, Powered by Discourse, best viewed with JavaScript enabled, https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.0.tar.xz, https://gitlab.gnome.org/GNOME/libxml2/-/issues/507. When I try to do an upgrade or install something, apt (-get or aptitude) throw an error, saying that perl can't find XML/SAX/Debian.pm while trying to configure libxml-libxml-perl. Here are my steps and the results. https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/. For a list of important open Using libxml2. checking for gzopen in -lz yes Can someone explain why this point is giving me 8.3V? During the ./configure it will produce the following error: However I do have libxslt installed, e.g. Not the answer you're looking for? Minor 9, Patch 4 for 2.9.4 Several cases of quadratic behavior in the XML push parser have been fixed. Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Pipe to/from the clipboard in a Bash script. Why does Acts not mention the deaths of Peter and Paul? Connect and share knowledge within a single location that is structured and easy to search. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. See the pkg-config man page for more details. Did the Golden Gate Bridge 'flatten' under the weight of 300,000 people in 1987? As brew tells you when it installs libxml2: This means that brew is not symlinking libxml2 to /usr/local/lib and /usr/local/include, and likely not linking the pkg-config file there as well, which is why libvisio can't find it. Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? rev2023.4.21.43403. downloaded 1.5 MB, * installing *source* package XML [ 16%] Building C object CMakeFiles/iio.dir/utilities.c.o pthread library not found; support for threads will be disabled. Installing R package XML on MacOS 10.13.6 [CentOS Stream 8]: Unknown repo crb : [Solved], Failed to download metadata for repo AppStream [CentOS], git push using GitHub token [Deprecating password authentication], Book Tatkal tickets fast using Tatkal for Sure App. Already on GitHub? OnDebian/Ubuntu you can install using apt-get as shown in the below command: Ran into similar issue when trying to install PHP SOAP extension. I think there is a problem with the environment variables when you install R through conda. How to automatically extend windows virtual disk size [Openstack], No such file or directory c++ Error [CentOS], How to configure Open vSwitch bridge for OpenStack, Too many connections for neutron-db-manage [MySQL], How to manually install higher version of PIP for Python v2.7, [CentOS 7]: Yum install python-pip | No package python-pip available, [OpenStack noVNC]: Code 400, message Client must support binary or base64 protocol [Solved], [CentOS Stream 8]: Error: Unknown repo epel [Solved]. args = "--configure-args='--with-libxml2'") macos - configure script cannot find libxml2 on mac - Stack Overflow How to access WhatsApp through Chrome Web browser? > biocLite("XML") So the other option left was to install from source. It's part of the Autoconf Archive; "apt-get install autoconf-archive" ought resolve this on Debian-based systems. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. ^ (Related homebrew issue: "libxml2 install path".). [ 5%] Building C object CMakeFiles/iio.dir/channel.c.o [ 11%] Building C object CMakeFiles/iio.dir/device.c.o simplifying this part of the code base and improving error reporting. To my unluck, i ran into following errors: The quick solution to the above problem is you need to install libxml2-devel package. -- Detecting C compile features The problem is it's looking for libxml-2.0, not libxml2. I also installed R through conda. 2. USE_XML2 = yes On whose turn does the fright from a terror dive end? headers, it was still possible to declare them manually. Well occasionally send you account related emails. Unfortunately, through yum, i couldnt upgrade php! Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. Protection against entity expansion attacks, also known as billion laughs How do you know the names. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. So I'm not sure if this correct behaviour, since the libxml & libusb are both in the sysroot specified in the cmake line. That will install the build dependencies for the btrfs-tools version in your package repository, rather than for the newer version you're trying to build. Sign in * installing *source* package XML Thanks for contributing an answer to Stack Overflow! Does a password policy with a restriction of repeated characters increase security? Worked fine on my manjaro machine with just the base-devel group installed. Browse other questions tagged. I'll play around with my PATH and see if I can get it going. If this is the same problem for you as it was for me, we should report the problem upstream to the XML maintainers. I note there is a pkg-config file listed for libxml2 by homebrew at: which is also available via a non-version-specific symlink as: so, if you have installed pkg-config with homebrew, like this: the solution may be just to add the path for that to your PKG_CONFIG_PATH with: Note: It is only after installing pkg-config (via brew) that homebrew will display pkg-config related "caveats" for many affected packages e.g. Realistically they should be interchangeable packages. Parabolic, suborbital and ballistic trajectories all follow elliptic paths. I'm a bit at a loss here, xsltproc is /usr/bin/xsltproc. checking for xmlParseFile in -lxml2 yes [ 19%] Building C object CMakeFiles/iio.dir/buffer.c.o LAPACK: /home/kkarius/anaconda3/lib/R/lib/libRlapack.so, locale: -- Build files have been written to: /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/build, Just to point out - we already provide binaries for armhf (Raspbian Stretch & Raspbian Jessie), they are linked from the readme at: I had already pkg-config installed but the path was pointing to correct location (AWS instance). Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? make[1]: *** [CMakeFiles/iio.dir/all] Error 2 Would you ever say "eat pig" instead of "eat pork"? Perl package not found with apt - Ask Ubuntu Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? Generally to troubleshoot a configure problem, you should download the package tarball, run the installation, and inspect the config.log file. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI, Ubuntu 23.04 (Lunar Lobster) is now released and is no longer off-topic, Announcement: AI-generated content is now permanently banned on Ask Ubuntu, Package libprotobuf was not found in the pkg-config search path, OpenSSL installed but no openssl.pc (needed by pkg-config), Can't install RMagick 4.0.0. Have a question about this project? For Microsoft Windows 64-bit Emacs, the file nt/INSTALL.w64 says this: Run msys2_shell.bat in your MSYS2 directory and you will see a BASH window opened. I'm trying to compile the lib https://github.com/bjz/gl-rs. In file included from /usr/include/libxml2/libxml/parser.h:810:0, Why do men's bikes have high bars where you can hit your testicles while women's bikes have the bar much lower? Content Discovery initiative April 13 update: Related questions using a Review our technical responses for the 2023 Developer Survey, Error installing R 2.13.0 packages (caret) on Ubuntu 10.04, Unable to compile xps after installing ROOT, missing libraries, RCDK package installation fails in R studio. -- Performing Test HAS_WPEDANTIC checking for gzopen in -lz no -- Generating done checking for C compiler default output file name a.out How can I control PNP and NPN transistors together from one pin? Is it safe to publish research papers in cooperation with Russian academics? So you have to specify the location of libxml2 when you run ./configure, just as brew and libvisio tell you to: (The paths on your system may vary, so do check! Easy way of installing it is using yum by issuing the following command on your CentOS/Fedora/RHEL Linux distributions. In the Ubuntu packaging system, the libXXX packages often only contain the runtime libraries necessary for running applications that dynamically link the library. >>Still the configure script stops with this erroe: >>checking for xmlSAXUserParseFile. Make sure your system has the libxml-dev or libxml2-dev package installed. privacy statement. -- Looking for pthread_setname_np This doesn't work for me. -- Looking for libusb-1.0 : Found Well occasionally send you account related emails. from /usr/include/libxml2/libxml/threads.h:35, By clicking Sign up for GitHub, you agree to our terms of service and -- Looking for strerror_r What does "up to" mean in "is first up to launch"? Please check your libxml2 installation. What is scrcpy OTG mode and how does it work? checking for suffix of object files o Xml2 package installation issues - pkg-config PATH help Also: shouldn't not finding libxml already throw an error in cmake? What does "up to" mean in "is first up to launch"? Why does contour plot not show point(s) where function has a discontinuity? R itself was installed using anaconda. [ 34%] Building C object CMakeFiles/iio.dir/local.c.o By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Making statements based on opinion; back them up with references or personal experience. sudo apt-get install libxml2-dev I'm unable to determine which is the right version (libxml or libxml2) for 14.04 but you'll want to make sure you have the -dev version installed. R -q --vanilla < Sign up for a free GitHub account to open an issue and contact its maintainers and the community. hi, when i configure dictconvert in dictconvert folder with ./configure command, then i get an error, it as follows: checking for libxml - version >= 2.5.0. no *** The xml2-config script installed by LIBXML could not be found *** If libxml was installed in PREFIX, make sure PREFIX/bin is in *** your path, or set the XML2_CONFIG environment variable to the *** full path to xml2-config. Don't subscribeAllReplies to my comments Package libxml2.0 was not found in the pkg-config search path. Find centralized, trusted content and collaborate around the technologies you use most. privacy statement. -- Looking for sys/types.h - found https://github.com/analogdevicesinc/libiio/blob/master/README.md. Easy way of installing it is using yum by issuing the following command on your CentOS/Fedora/RHEL Linux distributions. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Here is the diff in case someone else has the same problem, what didn't work, but I also tried: building and installing AUR version libxml2-git as well as installing libxml2-2.9.9-2. Looking for job perks? [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o Learn more about Stack Overflow the company, and our products. Upgrade Node.js to the latest version on Mac OS, Incompatible library version: nokogiri.bundle requires version 8.0.0 or later, but libiconv.2.dylib provides version 7.0.0, "code ." Asking for help, clarification, or responding to other answers. Checking directory of LIBXML_INCDIR privacy statement. it should tell you what environment variables you need to set in order to find libxml2 So, armed with these last two pieces of info, you should be able . If it detects the directory name as libxml instead of libxml2 it assumes you're using libxml1. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. [ 26%] Building C object CMakeFiles/iio.dir/scan.c.o Unexpected uint64 behaviour 0xFFFF'FFFF'FFFF'FFFF - 1 = 0? make -- Looking for stdint.h from /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/xml.c:23: error: Don't move past current position; error: Limit number of parser errors; parser: Lower entity nesting limit with XML_PARSE_HUGE; parser: Don't increase depth twice when parsing internal entities; parser: Improve detection of entity loops; parser: Only report a single entity error; libxml.h: Remove dubious definition of LIBXML_STATIC I started with a fresh copy of the LibIIO repo and re-ran cmake. memory pressure. Like "libxml2-devel". ** package XML successfully unpacked and MD5 sums checked Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? [Scigraphica-devel] ./configure error: libXML not found from /usr/include/libxml2/libxml/xmlmemory.h:218, I am trying to add libvisio in my mac os x from https://wiki.documentfoundation.org/DLP/Libraries/libvisio. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. About 90 memory errors in code paths handling malloc failures have been fixed. I can build libiio using "make all", but then "make install" fails trying to write to /usr/lib even though I've specified my own sysroot in the cmake line. no checking for xmlParseFile in -lxml. On what basis are pardoning decisions made by presidents or governors when exercising their pardoning power? xml2 installed but not found during compilation - Ask Ubuntu Ongoing work on libxml2 relies on funding. /usr/include/libxml2/libxml/encoding.h:31:26: fatal error: unicode/ucnv.h: No such file or directory Looking for job perks? [1] stats graphics grDevices utils datasets methods base, other attached packages: mkdir build Ah, so you're using Anaconda's R distribution. : % xsltproc --version Using libxml . I suspect that libusb is also being found in /usr/lib. Trying to install the XML package as follows I get the error configure: error: "libxml not found". By clicking Sign up for GitHub, you agree to our terms of service and Installing package(s) XML -- Performing Test HAS_WPEDANTIC - Success [OpenStack Glance]: Failed to contact the endpoint at https://localhost:9292 for discovery. So what include directory does CMake uses for libxml2? I suspect that libusb is also being found in /usr/lib. -- Check for working C compiler: /usr/bin/cc Make sure it is in your PATH or set the PKG_CONFIG environment variable to the full path to pkg-config. What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? Did the drapes in old theatres actually say "ASBESTOS" on them? Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. Why can pkg-config not find gsettings-desktop-schemas?